| sybil: strepneumo: home | [db=strepneumo_v15] |
| Welcome to the Streptococcus Pneumoniae Comparative System powered by Sybil |
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This website is built on top of a Chado comparative database and provides a number of tools for analyzing and visualizing the data. Sybil relies on precomputed searches-- primarily BLASTP searches and protein clustering analyses--the results of which are stored in the comparative database and queried as needed. More detailed description of Sybil's capability can be found at the sourceforge site: sybil.sourceforge.net |
| Version/News |
Sybil site release 26 on 8/31/2010Current Sybil Version: strepneumo-1.19.0 Current Data Version: 15 [Updates] - View all of the changes/updates to the strepneumo data and code here. This page will be updated every time there is a new Sybil release. [Previous Version] - Click here to view the previous version of strepneumo. This version will be kept for a few months after a new release. |
| Sybil Virtual Machine |
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The Sybil Virtual Machine allows 1 click installation of Strepneumo Sybil. Download the VMWare player from vmware to get started then click the button above to download the Sybil Virtual Machine. System Requirements
 - Sybil Virtual Machines are powered by CloVR |
| Support |
Funding for this project provided by PATH, an international nonprofit organization that improves the health of people around the world. |
| Downloads |
Right click and select 'download' or 'Save Link As' to download the files[Download Polypeptides] - Download all of the polyeptide sequences in fasta format [Download Gene Nucleotides] - Download all of the gene nucleotide sequences in fasta format [Download Genomic Sequence] - Download all of the Genomic sequences in fasta format |
| Putative Vaccine Candidate Search |
The following button links to a sample query showing putative vaccine candidate genes. |
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| Sybil Tutorial |
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| Sybil displays/analyses |
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| Analyses/computes | all analyses/computes loaded into chado |
| program | date | description |
|---|---|---|
| pipeline_summary | 2010-09-03 11:12:00 | none |
| pipeline_summary | 2010-09-03 11:12:00 | none |
| antigenic | 2010-09-03 11:58:00 | none |
| bepipred | 2010-09-03 11:58:00 | none |
| find_homopolymers | 2010-09-03 11:58:00 | none |
| fuzznuc | 2010-09-03 11:58:00 | none |
| hmmls | 2010-09-03 11:58:00 | none |
| hmmls | 2010-09-03 11:58:00 | none |
| hmmls | 2010-09-03 11:58:00 | none |
| hmmls | 2010-09-03 11:58:00 | none |
| hmmpfam | 2010-09-03 11:58:00 | none |
| hmmpfam | 2010-09-03 11:58:00 | none |
| hmmpfam | 2010-09-03 11:58:00 | none |
| hmmpfam | 2010-09-03 11:58:00 | none |
| lipoprotein_motif | 2010-09-03 11:58:00 | none |
| phobos | 2010-09-03 11:58:00 | none |
| repeatmasker | 2010-09-03 11:58:00 | none |
| signalp_nn | 2010-09-03 11:58:00 | none |
| signalp_hmm | 2010-09-03 11:58:00 | none |
| tmhmm | 2010-09-03 11:58:00 | none |
| j_ortholog_clusters | 2010-09-03 11:58:00 | Ortholog Clusters |
| jaccard | 2010-09-03 11:58:00 | Paralog Clusters |
| wu-blastp | 2010-09-09 17:39:00 | none |
| islandpath | 2010-09-10 15:55:00 | none |
| sybil web site: sybil.sourceforge.net | e-mail: driley@som.umaryland.edu |