sybil: strepneumo: List protein cluster singletons [db=strepneumo_v15]
1. List singletons from the following genomes/strains (optional):
If any of the following boxes are checked then only singleton proteins from the selected genomes/strains will be listed. If you wish to see *all* singleton proteins (with respect to the chosen protein cluster analyses) then do not check any of the boxes below:
Streptococcus mitis B6
Streptococcus pneumoniae 670
Streptococcus pneumoniae 70585
Streptococcus pneumoniae ATCC 700669
Streptococcus pneumoniae BS292
Streptococcus pneumoniae BS293
Streptococcus pneumoniae BS397
Streptococcus pneumoniae BS455
Streptococcus pneumoniae BS457
Streptococcus pneumoniae BS458
Streptococcus pneumoniae CDC0288-04
Streptococcus pneumoniae CDC1087-00
Streptococcus pneumoniae CDC1873-00
Streptococcus pneumoniae CDC3059-06
Streptococcus pneumoniae CGSP14
Streptococcus pneumoniae D39
Streptococcus pneumoniae G54
Streptococcus pneumoniae Hungary19A-6
Streptococcus pneumoniae JJA
Streptococcus pneumoniae MLV-016
Streptococcus pneumoniae P1031
Streptococcus pneumoniae R6
Streptococcus pneumoniae SP11-BS70
Streptococcus pneumoniae SP14-BS69
Streptococcus pneumoniae SP18-BS74
Streptococcus pneumoniae SP19-BS75
Streptococcus pneumoniae SP195
Streptococcus pneumoniae SP23-BS72
Streptococcus pneumoniae SP3-BS71
Streptococcus pneumoniae SP6-BS73
Streptococcus pneumoniae SP9-BS68
Streptococcus pneumoniae TCH8431/19A
Streptococcus pneumoniae TIGR4
Streptococcus pneumoniae Taiwan19F-14
Streptococcus pneumoniae capsular_loci
2. Select one or more protein cluster analyses:
Select one or more protein cluster analyses from those that appear below. Any protein that is a singleton (i.e., does not cluster with any other proteins) in all of the selected analyses will be reported in the resulting list.
Ortholog Clusters
Paralog Clusters
3. Additional filters:
If the first box below is checked then those singletons with any significant BLASTP match (e-value < 1e-5) to any other protein in strepneumo will be filtered from the results; the only singletons that will be listed will be those that have no significant BLASTP matches (except to themselves.) If the second box below is checked then any proteins without amino acid sequences will be omitted from the output.
Filter out all singletons with BLASTP matches to any other protein in strepneumo
Filter out all proteins that do not have a valid amino acid sequence
4. Select an output format:
5. Run the report:
or the form
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