sybil: strepneumo: List protein clusters

Select a Protein Cluster Analysis

Analysis:

Only list clusters that do/do not contain proteins from certain genomes/strains (optional)

For each genome/strain listed below, check the corresponding "YES" box to retrieve only those clusters that contain at least one protein from that genome, or check the "NO" box to retrieve only those clusters that DO NOT contain any proteins from that genome. If you wish to see all clusters in the selected analysis then do not check any of the boxes below. Please note also that the "Jaccard clusters" only contain proteins from a single genome, so checking "YES" for more than one genome for that cluster analysis will always result in an empty result set.

YES	NO
		Streptococcus mitis B6
		Streptococcus pneumoniae 670
		Streptococcus pneumoniae 70585
		Streptococcus pneumoniae ATCC 700669
		Streptococcus pneumoniae BS292
		Streptococcus pneumoniae BS293
		Streptococcus pneumoniae BS397
		Streptococcus pneumoniae BS455
		Streptococcus pneumoniae BS457
		Streptococcus pneumoniae BS458
		Streptococcus pneumoniae CDC0288-04
		Streptococcus pneumoniae CDC1087-00
		Streptococcus pneumoniae CDC1873-00
		Streptococcus pneumoniae CDC3059-06
		Streptococcus pneumoniae CGSP14
		Streptococcus pneumoniae D39
		Streptococcus pneumoniae G54
		Streptococcus pneumoniae Hungary19A-6

YES	NO
		Streptococcus pneumoniae JJA
		Streptococcus pneumoniae MLV-016
		Streptococcus pneumoniae P1031
		Streptococcus pneumoniae R6
		Streptococcus pneumoniae SP11-BS70
		Streptococcus pneumoniae SP14-BS69
		Streptococcus pneumoniae SP18-BS74
		Streptococcus pneumoniae SP19-BS75
		Streptococcus pneumoniae SP195
		Streptococcus pneumoniae SP23-BS72
		Streptococcus pneumoniae SP3-BS71
		Streptococcus pneumoniae SP6-BS73
		Streptococcus pneumoniae SP9-BS68
		Streptococcus pneumoniae TCH8431/19A
		Streptococcus pneumoniae TIGR4
		Streptococcus pneumoniae Taiwan19F-14
		Streptococcus pneumoniae capsular_loci

Check/uncheck all of the above

Restrict Protein length

Minimum Length:

Maximum Length:

Restrict by TIGR role id(s)

Role ID(s) - as a comma seperated list:

Output Format

List all of the proteins in each cluster (UNcheck to display only a summary report) - only works for tab-delimited output

Run the report

or the form

sybil web site: sybil.sourceforge.net

e-mail: driley@som.umaryland.edu