| parameter name |
parameter value |
| bin_dir |
/usr/local/projects/ergatis/package-driley/bin |
| bsml_output_list |
/usr/local/projects/STREP/annotation/output_repository/hmmls/5828_boxC/hmmls.bsml.list |
| classification |
alignment / model |
| component_config |
/local/projects/STREP/annotation/workflow/runtime/hmmls/5828_boxC/hmmls.boxC.final.config |
| component_name |
hmmls |
| component_xml |
/local/projects/STREP/annotation/workflow/runtime/hmmls/5828_boxC/component.xml |
| componenturl |
/usr/local/projects/STREP/annotation/workflow/runtime/hmmls/5828_boxC/component.xml |
| database_path |
/local/projects/STREP/repeats/boxC.hmm |
| debug |
0 |
| ergatis_dir |
/usr/local/projects/ergatis/package-driley |
| fasta_nr_peptide |
/usr/local/db/panda/AllGroup/AllGroup.fasta |
| group_count |
150 |
| hmm_all |
/usr/local/projects/db/coding_hmm/coding_hmm.lib.bin |
| input_extension |
fsa |
| input_file_list |
/usr/local/projects/STREP/annotation/output_repository/split_multifasta/5828_genomic/split_multifasta.fsa.list |
| iterator1 |
i1 |
| iterator1_xml |
/usr/local/projects/ergatis/package-driley/docs/hmmls.i1.xml |
| lib_dir |
/usr/local/projects/ergatis/package-driley/lib |
| nodistrib |
0 |
| output_directory |
/usr/local/projects/STREP/annotation/output_repository/hmmls/5828_boxC |
| output_token |
boxC |
| pipeline_token |
unnamed |
| pipeline_xml |
/local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml |
| pipelineid |
5828 |
| pipelineurl |
/local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml |
| project |
STREP |
| project_config |
/local/projects/STREP/annotation/workflow/project.config |
| project_id_repository |
/usr/local/projects/STREP/annotation/workflow/project_id_repository |
| raw_output_list |
/usr/local/projects/STREP/annotation/output_repository/hmmls/5828_boxC/hmmls.raw.list |
| release_tag |
$Name$ |
| repository_root |
/usr/local/projects/STREP/annotation |
| revision |
$Revision: 5519 $ |
| simple_repeat_lib |
/usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib |
| software_config |
/usr/local/projects/ergatis/software.config |
| template_xml |
/usr/local/projects/ergatis/package-driley/docs/hmmls.xml |
| tmp_dir |
/local/scratch/STREP/hmmls/5828_boxC |
| workflow_repository |
/usr/local/projects/STREP/annotation/workflow/runtime/hmmls/5828_boxC |