| parameter name |
parameter value |
| bin_dir |
/usr/local/projects/ergatis/package-driley/bin |
| classification |
clustering |
| component_config |
/local/projects/STREP/annotation/workflow/runtime/jaccard/5828_default/jaccard.default.final.config |
| component_name |
jaccard |
| component_xml |
/local/projects/STREP/annotation/workflow/runtime/jaccard/5828_default/component.xml |
| componenturl |
/usr/local/projects/STREP/annotation/workflow/runtime/muscle/5828_jaccard/component.xml |
| debug |
0 |
| ergatis_dir |
/usr/local/projects/ergatis/package-driley |
| fasta_nr_peptide |
/usr/local/db/panda/AllGroup/AllGroup.fasta |
| group_count |
150 |
| hmm_all |
/usr/local/projects/db/coding_hmm/coding_hmm.lib.bin |
| input_extension |
bsml |
| input_file_list |
/local/projects/STREP/pneumo_data/pneumo_v15/strepneumo_v15.bsml.list |
| iterator1 |
i1 |
| iterator1_xml |
/usr/local/projects/ergatis/package-driley/docs/jaccard.i1.xml |
| lib_dir |
/usr/local/projects/ergatis/package-driley/lib |
| linkscore |
.6 |
| match_bsml_file_list |
/usr/local/projects/STREP/annotation/output_repository/wu-blastp/5828_default/wu-blastp.bsml.list |
| max_multi_alignment |
30 |
| nodistrib |
0 |
| output_directory |
/usr/local/projects/STREP/annotation/output_repository/jaccard/5828_default |
| output_token |
default |
| pidentity_cutoff |
80 |
| pipeline_xml |
/local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml |
| pipelineid |
5828 |
| pipelineurl |
/local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml |
| project |
STREP |
| project_config |
/local/projects/STREP/annotation/workflow/project.config |
| project_id_repository |
/usr/local/projects/STREP/annotation/workflow/project_id_repository |
| pvalcut |
1e-5 |
| release_tag |
$Name$ |
| repository_root |
/usr/local/projects/STREP/annotation |
| revision |
$Revision: 5843 $ |
| simple_repeat_lib |
/usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib |
| software_config |
/usr/local/projects/ergatis/software.config |
| template_xml |
/usr/local/projects/ergatis/package-driley/docs/jaccard.xml |
| tmp_dir |
/local/scratch/STREP/jaccard/5828_default |
| workflow_repository |
/usr/local/projects/STREP/annotation/workflow/runtime/jaccard/5828_default |