sybil: strepneumo: analyses : pipeline_summary (id=4) [db=strepneumo_v15]

ANALYSIS
 analysis/compute info. [help]
program pipeline_summary 2.0
algorithm pipeline_summary
description
load date 2010-09-03 11:12:00
PARAMETERS
 parameters used to run the analysis [help]
parameter name parameter value
bin_dir /usr/local/projects/ergatis/package-v1r26/bin
bsml_output_list /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457315284_default/pipeline_summary.bsml.list
bsml_output_list /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/456982081_default/pipeline_summary.bsml.list
bsml_output_list /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457099111_default/pipeline_summary.bsml.list
bsml_output_list /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457174313_default/pipeline_summary.bsml.list
bsml_output_list /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457174314_default/pipeline_summary.bsml.list
bsml_output_list /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457014822_default/pipeline_summary.bsml.list
bsml_output_list /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457139072_default/pipeline_summary.bsml.list
bsml_output_list /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457237832_default/pipeline_summary.bsml.list
bsml_version bsml-v2r13b3
chado_prism_version prism-v1r26b1
chado_schema_version chado-v1r15b1
classification functional prediction
coati_version prism-v1r26b2
component_config /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457139072_default/pipeline_summary.default.final.config
component_config /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457237832_default/pipeline_summary.default.final.config
component_config /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457315284_default/pipeline_summary.default.final.config
component_config /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457014822_default/pipeline_summary.default.final.config
component_config /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457174314_default/pipeline_summary.default.final.config
component_config /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457174313_default/pipeline_summary.default.final.config
component_config /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457099111_default/pipeline_summary.default.final.config
component_config /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/456982081_default/pipeline_summary.default.final.config
component_name pipeline_summary
component_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457139072_default/component.xml
component_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457174313_default/component.xml
component_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457237832_default/component.xml
component_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457315284_default/component.xml
component_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/456982081_default/component.xml
component_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457174314_default/component.xml
component_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457014822_default/component.xml
component_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline_summary/457099111_default/component.xml
componenturl /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457099111_default/component.xml
componenturl /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457237832_default/component.xml
componenturl /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457174313_default/component.xml
componenturl /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457174314_default/component.xml
componenturl /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457315284_default/component.xml
componenturl /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/456982081_default/component.xml
componenturl /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457014822_default/component.xml
componenturl /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457139072_default/component.xml
debug 0
ergatis_dir /usr/local/projects/ergatis/package-v1r26
ergatis_version ergatis-v2r10b1
euk_prism_version prism-v1r26b1
fasta_nr_peptide /usr/local/db/panda/AllGroup/AllGroup.fasta
group_count 150
hmm_all /usr/local/projects/db/coding_hmm/coding_hmm.lib.bin
input_extension bsml
input_file_list /usr/local/projects/STREP/PSACM/output_repository/predict_prokaryotic_gene_function/457014822_default/predict_prokaryotic_gene_function.bsml.list
input_file_list /usr/local/projects/STREP/PSACM/output_repository/predict_prokaryotic_gene_function/457315284_default/predict_prokaryotic_gene_function.bsml.list
input_file_list /usr/local/projects/STREP/PSACM/output_repository/predict_prokaryotic_gene_function/457174314_default/predict_prokaryotic_gene_function.bsml.list
input_file_list /usr/local/projects/STREP/PSACM/output_repository/predict_prokaryotic_gene_function/457099111_default/predict_prokaryotic_gene_function.bsml.list
input_file_list /usr/local/projects/STREP/PSACM/output_repository/predict_prokaryotic_gene_function/457139072_default/predict_prokaryotic_gene_function.bsml.list
input_file_list /usr/local/projects/STREP/PSACM/output_repository/predict_prokaryotic_gene_function/456982081_default/predict_prokaryotic_gene_function.bsml.list
input_file_list /usr/local/projects/STREP/PSACM/output_repository/predict_prokaryotic_gene_function/457237832_default/predict_prokaryotic_gene_function.bsml.list
input_file_list /usr/local/projects/STREP/PSACM/output_repository/predict_prokaryotic_gene_function/457174313_default/predict_prokaryotic_gene_function.bsml.list
iterator1 i1
iterator1_xml /usr/local/projects/ergatis/package-v1r26/docs/pipeline_summary.i1.xml
lib_dir /usr/local/projects/ergatis/package-v1r26/lib
nodistrib 0
output_directory /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457174313_default
output_directory /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457099111_default
output_directory /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457237832_default
output_directory /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457174314_default
output_directory /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/456982081_default
output_directory /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457014822_default
output_directory /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457139072_default
output_directory /usr/local/projects/STREP/PSACM/output_repository/pipeline_summary/457315284_default
output_token default
pipeline_token unnamed
pipeline_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457014822/pipeline.xml
pipeline_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457315284/pipeline.xml
pipeline_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457237832/pipeline.xml
pipeline_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/456982081/pipeline.xml
pipeline_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457099111/pipeline.xml
pipeline_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457174313/pipeline.xml
pipeline_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457174314/pipeline.xml
pipeline_xml /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457139072/pipeline.xml
pipelineid 457315284
pipelineid 457099111
pipelineid 457237832
pipelineid 457139072
pipelineid 457174313
pipelineid 457014822
pipelineid 456982081
pipelineid 457174314
pipelineurl /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457174313/pipeline.xml
pipelineurl /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457139072/pipeline.xml
pipelineurl /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457014822/pipeline.xml
pipelineurl /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/456982081/pipeline.xml
pipelineurl /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457237832/pipeline.xml
pipelineurl /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457174314/pipeline.xml
pipelineurl /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457315284/pipeline.xml
pipelineurl /usr/local/projects/STREP/PSACM//workflow/runtime/pipeline/457099111/pipeline.xml
project psacm
project_config /usr/local/projects/STREP/PSACM//workflow/project.config
project_id_repository /usr/local/projects/STREP/PSACM/workflow/project_id_repository
prok_prism_version prism-v1r26b1
release_tag $Name: $
repository_root /usr/local/projects/STREP/PSACM
revision $Revision: 1.3 $
shared_prism_version prism-v1r26b1
simple_repeat_lib /usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib
software_config /usr/local/projects/ergatis/software.config
template_xml /usr/local/projects/ergatis/package-v1r26/docs/pipeline_summary.xml
tmp_dir /usr/local/scratch/psacm/pipeline_summary/457237832_default
tmp_dir /usr/local/scratch/psacm/pipeline_summary/457099111_default
tmp_dir /usr/local/scratch/psacm/pipeline_summary/457014822_default
tmp_dir /usr/local/scratch/psacm/pipeline_summary/457139072_default
tmp_dir /usr/local/scratch/psacm/pipeline_summary/457315284_default
tmp_dir /usr/local/scratch/psacm/pipeline_summary/457174313_default
tmp_dir /usr/local/scratch/psacm/pipeline_summary/457174314_default
tmp_dir /usr/local/scratch/psacm/pipeline_summary/456982081_default
workflow_repository /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457139072_default
workflow_repository /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457315284_default
workflow_repository /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457099111_default
workflow_repository /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457014822_default
workflow_repository /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457174313_default
workflow_repository /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/456982081_default
workflow_repository /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457237832_default
workflow_repository /usr/local/projects/STREP/PSACM/workflow/runtime/pipeline_summary/457174314_default
sybil web site: sybil.sourceforge.net e-mail: driley@som.umaryland.edu