sybil: strepneumo: analyses : jaccard (id=106) [db=strepneumo_v15]

ANALYSIS
analysis/compute info. [help]
program jaccard $Name$
algorithm jaccard
description Paralog Clusters
load date 2010-09-03 11:58:00
PARAMETERS
parameters used to run the analysis [help]
parameter name parameter value
bin_dir /usr/local/projects/ergatis/package-driley/bin
classification clustering
component_config /local/projects/STREP/annotation/workflow/runtime/jaccard/5828_default/jaccard.default.final.config
component_name jaccard
component_xml /local/projects/STREP/annotation/workflow/runtime/jaccard/5828_default/component.xml
componenturl /usr/local/projects/STREP/annotation/workflow/runtime/muscle/5828_jaccard/component.xml
debug 0
ergatis_dir /usr/local/projects/ergatis/package-driley
fasta_nr_peptide /usr/local/db/panda/AllGroup/AllGroup.fasta
group_count 150
hmm_all /usr/local/projects/db/coding_hmm/coding_hmm.lib.bin
input_extension bsml
input_file_list /local/projects/STREP/pneumo_data/pneumo_v15/strepneumo_v15.bsml.list
iterator1 i1
iterator1_xml /usr/local/projects/ergatis/package-driley/docs/jaccard.i1.xml
lib_dir /usr/local/projects/ergatis/package-driley/lib
linkscore .6
match_bsml_file_list /usr/local/projects/STREP/annotation/output_repository/wu-blastp/5828_default/wu-blastp.bsml.list
max_multi_alignment 30
nodistrib 0
output_directory /usr/local/projects/STREP/annotation/output_repository/jaccard/5828_default
output_token default
pidentity_cutoff 80
pipeline_xml /local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml
pipelineid 5828
pipelineurl /local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml
project STREP
project_config /local/projects/STREP/annotation/workflow/project.config
project_id_repository /usr/local/projects/STREP/annotation/workflow/project_id_repository
pvalcut 1e-5
release_tag $Name$
repository_root /usr/local/projects/STREP/annotation
revision $Revision: 5843 $
simple_repeat_lib /usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib
software_config /usr/local/projects/ergatis/software.config
template_xml /usr/local/projects/ergatis/package-driley/docs/jaccard.xml
tmp_dir /local/scratch/STREP/jaccard/5828_default
workflow_repository /usr/local/projects/STREP/annotation/workflow/runtime/jaccard/5828_default
sybil web site: sybil.sourceforge.net e-mail: driley@som.umaryland.edu