sybil: strepneumo: analyses : hmmpfam (id=112) [db=strepneumo_v15]

ANALYSIS
analysis/compute info. [help]
program hmmpfam $Name$
algorithm hmmpfam
description none
load date 2010-09-03 11:58:00
PARAMETERS
parameters used to run the analysis [help]
parameter name parameter value
bin_dir /usr/local/projects/ergatis/package-driley/bin
bsml_output_list /usr/local/projects/STREP/annotation/output_repository/hmmpfam/5828_fibronectin/hmmpfam.bsml.list
classification alignment / model
component_config /local/projects/STREP/annotation/workflow/runtime/hmmpfam/5828_fibronectin/hmmpfam.fibronectin.final.config
component_name hmmpfam
component_xml /local/projects/STREP/annotation/workflow/runtime/hmmpfam/5828_fibronectin/component.xml
componenturl /usr/local/projects/STREP/annotation/workflow/runtime/hmmpfam/5828_fibronectin/component.xml
database_path /local/projects/STREP/pneumo_data/hmm_data/fibronectin.lib
debug 0
ergatis_dir /usr/local/projects/ergatis/package-driley
fasta_nr_peptide /usr/local/db/panda/AllGroup/AllGroup.fasta
group_count 150
hmm_all /usr/local/projects/db/coding_hmm/coding_hmm.lib.bin
input_extension fsa
input_file_list /usr/local/projects/STREP/annotation/output_repository/split_multifasta/5828_polyp/split_multifasta.fsa.list
iterator1 i1
iterator1_xml /usr/local/projects/ergatis/package-driley/docs/hmmpfam.i1.xml
lib_dir /usr/local/projects/ergatis/package-driley/lib
nodistrib 0
output_directory /usr/local/projects/STREP/annotation/output_repository/hmmpfam/5828_fibronectin
output_token fibronectin
pipeline_token unnamed
pipeline_xml /local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml
pipelineid 5828
pipelineurl /local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml
project STREP
project_config /local/projects/STREP/annotation/workflow/project.config
project_id_repository /usr/local/projects/STREP/annotation/workflow/project_id_repository
raw_output_list /usr/local/projects/STREP/annotation/output_repository/hmmpfam/5828_fibronectin/hmmpfam.raw.list
release_tag $Name$
repository_root /usr/local/projects/STREP/annotation
revision $Revision: 5801 $
simple_repeat_lib /usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib
software_config /usr/local/projects/ergatis/software.config
template_xml /usr/local/projects/ergatis/package-driley/docs/hmmpfam.xml
tmp_dir /local/scratch/STREP/hmmpfam/5828_fibronectin
workflow_repository /usr/local/projects/STREP/annotation/workflow/runtime/hmmpfam/5828_fibronectin
sybil web site: sybil.sourceforge.net e-mail: driley@som.umaryland.edu