sybil: strepneumo: analyses : hmmls (id=96) [db=strepneumo_v15]

ANALYSIS
analysis/compute info. [help]
program hmmls $Name$
algorithm hmmls
description none
load date 2010-09-03 11:58:00
PARAMETERS
parameters used to run the analysis [help]
parameter name parameter value
bin_dir /usr/local/projects/ergatis/package-driley/bin
bsml_output_list /usr/local/projects/STREP/annotation/output_repository/hmmls/5828_boxB/hmmls.bsml.list
classification alignment / model
component_config /local/projects/STREP/annotation/workflow/runtime/hmmls/5828_boxB/hmmls.boxB.final.config
component_name hmmls
component_xml /local/projects/STREP/annotation/workflow/runtime/hmmls/5828_boxB/component.xml
componenturl /usr/local/projects/STREP/annotation/workflow/runtime/hmmls/5828_boxB/component.xml
database_path /local/projects/STREP/repeats/boxB.hmm
debug 0
ergatis_dir /usr/local/projects/ergatis/package-driley
fasta_nr_peptide /usr/local/db/panda/AllGroup/AllGroup.fasta
group_count 150
hmm_all /usr/local/projects/db/coding_hmm/coding_hmm.lib.bin
input_extension fsa
input_file_list /usr/local/projects/STREP/annotation/output_repository/split_multifasta/5828_genomic/split_multifasta.fsa.list
iterator1 i1
iterator1_xml /usr/local/projects/ergatis/package-driley/docs/hmmls.i1.xml
lib_dir /usr/local/projects/ergatis/package-driley/lib
nodistrib 0
output_directory /usr/local/projects/STREP/annotation/output_repository/hmmls/5828_boxB
output_token boxB
pipeline_token unnamed
pipeline_xml /local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml
pipelineid 5828
pipelineurl /local/projects/STREP/annotation/workflow/runtime/pipeline/5828/pipeline.xml
project STREP
project_config /local/projects/STREP/annotation/workflow/project.config
project_id_repository /usr/local/projects/STREP/annotation/workflow/project_id_repository
raw_output_list /usr/local/projects/STREP/annotation/output_repository/hmmls/5828_boxB/hmmls.raw.list
release_tag $Name$
repository_root /usr/local/projects/STREP/annotation
revision $Revision: 5519 $
simple_repeat_lib /usr/local/devel/ANNOTATION/RepeatMasker20020713/Libraries/simple.lib
software_config /usr/local/projects/ergatis/software.config
template_xml /usr/local/projects/ergatis/package-driley/docs/hmmls.xml
tmp_dir /local/scratch/STREP/hmmls/5828_boxB
workflow_repository /usr/local/projects/STREP/annotation/workflow/runtime/hmmls/5828_boxB
sybil web site: sybil.sourceforge.net e-mail: driley@som.umaryland.edu