sybil: strepneumo: protein BS397_621 [db=strepneumo_v15]
PROTEIN PROPERTIES properties of BS397_621
property value
organism
Streptococcus pneumoniae BS397
product name LPXTG-motif cell wall anchor domain protein
sequence length 2088 aa
created 2010-09-03 11:12:00
last modified 2010-09-03 11:12:00
DATABASE REFERENCES database refs for BS397_621
database accession version
PROTEIN CLUSTERS clusters of which BS397_621 is a member
cluster program algorithm analysis description
strepneumo_v15.match.2047595087.1 j_ortholog_clusters j_ortholog_clusters Ortholog Clusters
GENOMIC CONTEXT genomic context of the gene show_protein_clusters
sequence location strand
pneumoniae BS397 (2067673bp) (2.07 Mb) 586890-593157 +
additional feature types: pmark spacer tRNA repeatmasker simple repeats homopolymeric tracts tandem repeats detected by phobos BoxA Repeat BoxB Repeat BoxC Repeat RUP Repeat Genomic Island (from IslandPath) Signal Peptide (Neural Network) Signal Peptide (HMM) B-cell epitopes from BepiPred antigenic regions from EMBOSS antigenic Lipoprotein Attachment Site LPxTG motif Membrane surface protein motif Bacteriocin protein motif Fibronectin binding protein motif Transmembrane Regions (tmhmm)
Select All
Deselect All
display at most: 5 kb 10 kb 15 kb 25 kb 50 kb on either side of BS397_621:
BLASTP HITS proteins with significant BLASTP matches
show top: 5 10 20 50 BLASTP matches
highlighted proteins: none strepneumo_v15.match.2047595087.1
SEQUENCE the amino acid sequence in FASTA format
Download Protein FASTA
>BS397_621 polypeptide
MIEDRKVDFNQNWYFKLNANSKEAIKPDVDVSTWKKLDLPYDWSIFNDFDHESPAQNEGGQLNGGEAWYR
KTFKLDEKNLKKNVRLTFDGVYMDSQVYVNGQLVGHYPNGYNQFSYDITKYLHKDGRENVIAVHAVNKQP
SSRWYSGSGIYRDVTLQVTDKVHVEKNGTTILTPKLEEQQHGKVETHVTSKIVNTDDKDHELVAEYQIVE
RGGHAVTGLVRTASRTLKAHESTSLDAILEVERPKLWTVLNDKPALYELITRVYRDGQLVDAKKDLFGYR
YYHWTPNEGFSLNGERIKFHGVSLHHDHGALGAEENYKAEYRRLKQMKEMGVNSIRTTHNPASEQTLQIA
AELGLLVQEEAFDTWYGGKKPYDYGRFFEKDATHPEARKGEKWSDFDLRTMVERGKNNPAIFMWSIGNEI
GEANGDAHSLATVKRLVKVIKDVDKTRYVTMGADKFRFGNGSGGHEKIADELDAVGFNYSEDNYKALRAK
HPKWLIYGSETSSATRTRGSYYRPERELKHSNGPERNYEQSDYGNDRVGWGKTATASWTFDRDNAGYAGQ
FIWTGTDYIGEPTPWHNQNQTPVKSSYFGIVDTAGIPKHDFYLYQSQWVSVKKKPMVHLLPHWNWENKEL
ASKVADSEGKIPVRAYSNASSVELFLNGKSLGLKTFNKKQTSDGRTYQEGANANELYLEWKVAYQPGTLE
AIARDESGKEIARDKITTAGKPAAVRLIKEDHAIAADGKDLTYIYYEIVDSQGNVVPTANNLVRFQLHGQ
GQLVGVDNGEQASRERYKAQADGSWIRKAFNGKGVAIVKSTEQAGKFTLTAHSDLLKSNQVTVFTGKKEG
QEKTVLGTEVPKVQTIIGEAPEMPTTVPFVYSDGSRAERPVTWSLVDVSKPGIVTVKGMADGREVEARVE
VIALKSELPVVKRIAPNTNLNSVDKSVSYVLTDGSVQEYEVDKWEIAEEDKAKLAIPGSRIQATGYLEGQ
PIHATLVVEEGNPAAPVVPTVTVGGEAVTGLTSRQPMQYRTLSYGAQLPEVTASAENADVTVLQASAANG
MRASIFIQPKDGGPLQTYAIQFLEEAPKIAHLSLQVEKADSLKEDQTVKLSVRAHYQDGTQAVLPADKVT
FSTSGEGEVAIRKGMLELHKPGAVTLNAEYEGAKGQVELTIQANTEKKIAQSIRPVNVVTDLHQEPSLPA
TVTVEYDKGFPKTHKVTWQAIPKEKLDSYQIFEVLGKVEGIDLEARAKVSVEGIVSVEEVSVTTPIAEAP
QLPESVRTYDSNGHVSSAKVAWDAIRPEQYAKEGVFTVNGRLEGTQLTTKLHVRVSAQTEQGANISDQWT
GSELPLAFASDSNPSDPVSNVNDKLISYNNQPANRWTNWNRSNPEASVGVLFGDSGILSKRSVDNLSVGF
HEDHGVGAPKSYVIEYYVGKTVPTAPKNPSFVGNEDHVFNDSANWKPVTNLKAPAKLKAGEMNHFSFDKV
ETYAVRIRMVKADNKRGTSITEVQIFAKQVAAAKQGQTRIQVDGKDLANFNPDLTDYYLESVDGKVPAVT
ASVSNNGLATVVPSVREGEPVRVIAKAENGDILGEYRLHFTKDKNLLSHKPVAAVKQARLLQVGQALELP
TKVPVYFTGKDSYETKDLTVEWEEVPAENLTKAGQFTIRGRVLGSDLVAEVTVRVTDKLGEALSDNPNYD
ENSNQAFASATNDIDKNSHDRVDYLNDGDHSENRRWTNWSPTPSSNPEVSAGVIFRENGKFVERTVAQAK
LHFFADSGTDAPTKLVLERYVGPEFEVPTYYSNYQAYDADHPFNNPENWEAVPYRADKDIAAGDEINVTF
KAVKAKAMRWRMERKADKSGVAMIEMTFLAPSELPQESTQSKILVDGKELADFAENRQDYQITYKGQRPK
VSVEENNQVASTVVDSGEDSLPVLVRLVSESGKQVKEYRIHLTKEKPVSEKTVAAVQEDLPKLEFVEKDL
AYKTVEKKDSTLYLGETRVEQEGKTGKERIFTAINPDGSKEEKLREVVEAPTDRIVLVGTKPVAQEAKKP
QVSEKADTKPIDSSEASQTNKAQLPNTGSAASQAAVAAGLALLGLSAGLVVTKGKKED
Download Nucleotide FASTA
>BS397_621 nucleotide
ATGATTGAAGACAGGAAAGTGGATTTTAATCAAAATTGGTATTTTAAACTCAATGCAAATTCTAAGGAAG
CCATTAAACCCGATGTAGACGTATCTACGTGGAAAAAATTAGATTTACCGTATGACTGGAGTATCTTTAA
CGATTTCGATCATGAATCTCCTGCACAAAATGAAGGTGGACAGCTCAACGGTGGGGAAGCTTGGTATCGC
AAGACTTTCAAACTAGATGAAAAAAACCTCAAGAAAAATGTTCGCCTTACTTTTGATGGCGTCTACATGG
ATTCTCAAGTTTATGTCAATGGTCAGTTAGTGGGGCATTATCCAAATGGTTATAACCAGTTCTCATACGA
TATCACCAAATACCTTCACAAAGATGGTCGTGAGAATGTGATTGCTGTCCATGCAGTCAACAAACAGCCA
AGTAGCCGTTGGTATTCAGGAAGTGGTATCTATCGTGATGTGACTTTACAAGTGACAGATAAGGTGCATG
TTGAGAAAAATGGGACAACTATTTTAACACCAAAACTTGAAGAACAACAACATGGCAAGGTTGAAACTCA
TGTGACCAGCAAAATCGTCAATACGGACGACAAAGACCATGAACTTGTAGCCGAATATCAAATCGTTGAA
CGAGGTGGTCATGCTGTAACAGGCTTAGTTCGTACAGCGAGTCGTACCTTAAAAGCACATGAATCAACAA
GCCTAGATGCGATTTTAGAAGTTGAAAGACCAAAACTCTGGACCGTTTTAAATGACAAACCTGCCTTGTA
CGAATTGATTACGCGTGTTTACCGTGACGGTCAATTGGTTGATGCTAAGAAGGATTTGTTTGGTTACCGT
TACTATCACTGGACTCCAAATGAAGGTTTCTCTTTGAATGGTGAACGTATTAAATTCCATGGAGTATCCT
TGCACCACGACCATGGGGCGCTTGGAGCAGAAGAAAACTATAAAGCAGAATATCGCCGTCTCAAACAAAT
GAAGGAGATGGGAGTTAACTCCATCCGTACAACCCACAACCCTGCTAGTGAGCAAACCTTGCAAATCGCA
GCAGAACTAGGTTTACTCGTTCAGGAAGAGGCTTTTGATACTTGGTATGGTGGCAAGAAACCTTATGACT
ATGGACGTTTCTTTGAAAAAGATGCCACTCACCCAGAAGCTCGAAAAGGTGAAAAATGGTCTGATTTTGA
CCTACGTACCATGGTCGAAAGAGGCAAAAACAACCCTGCTATCTTCATGTGGTCAATTGGTAATGAAATA
GGTGAAGCTAATGGTGATGCCCACTCTTTAGCAACTGTTAAACGTTTGGTCAAGGTTATCAAGGATGTTG
ATAAGACTCGCTATGTTACCATGGGAGCAGATAAATTCCGTTTCGGTAATGGTAGCGGAGGGCATGAGAA
AATTGCTGATGAACTCGATGCTGTTGGATTTAACTATTCTGAAGATAATTACAAAGCCCTTAGAGCTAAG
CATCCAAAATGGTTGATTTACGGTTCAGAAACATCATCAGCAACCCGTACACGTGGAAGTTACTATCGCC
CTGAACGTGAATTGAAACATAGCAATGGACCTGAGCGTAATTATGAACAGTCAGATTATGGAAATGATCG
TGTGGGTTGGGGGAAAACAGCAACCGCTTCATGGACTTTTGACCGTGACAACGCTGGCTATGCTGGACAG
TTTATCTGGACAGGTACGGACTATATTGGTGAACCTACACCATGGCACAACCAAAATCAAACTCCTGTTA
AGAGCTCTTACTTTGGTATCGTAGATACAGCCGGCATTCCAAAACATGACTTCTATCTCTACCAAAGCCA
ATGGGTTTCTGTTAAGAAGAAACCGATGGTACACCTTCTTCCTCACTGGAACTGGGAAAACAAAGAATTA
GCATCCAAAGTAGCTGACTCAGAAGGTAAGATTCCAGTTCGTGCTTATTCGAATGCTTCTAGTGTAGAAT
TGTTCTTGAATGGAAAATCTCTTGGTCTTAAGACTTTCAATAAAAAACAAACCAGCGATGGGCGGACTTA
CCAAGAAGGTGCAAATGCTAATGAACTTTATCTTGAATGGAAAGTTGCCTATCAACCAGGTACCTTGGAA
GCAATTGCTCGTGATGAATCTGGCAAGGAAATTGCTCGAGATAAGATTACGACTGCTGGTAAGCCAGCGG
CAGTTCGTCTTATTAAGGAAGACCATGCGATTGCAGCAGATGGAAAAGACTTGACTTACATCTACTATGA
AATTGTTGACAGCCAGGGGAATGTGGTTCCAACTGCTAATAATCTGGTTCGCTTCCAATTGCATGGCCAA
GGTCAACTGGTCGGTGTAGATAACGGAGAACAAGCCAGCCGTGAACGCTATAAGGCGCAAGCAGATGGTT
CTTGGATTCGTAAAGCATTTAATGGTAAAGGTGTTGCCATTGTCAAATCAACTGAACAAGCAGGGAAATT
CACCCTTACTGCCCACTCTGATCTCTTGAAATCGAACCAAGTCACTGTCTTTACTGGTAAGAAAGAAGGA
CAAGAAAAGACTGTTTTGGGGACAGAGGTGCCAAAAGTACAGACCATTATTGGAGAGGCACCTGAAATGC
CTACCACTGTTCCGTTTGTATACAGTGATGGTAGTCGTGCAGAACGTCCTGTAACCTGGTCTTTAGTAGA
TGTGAGCAAGCCTGGTATTGTAACGGTGAAAGGTATGGCTGACGGACGAGAAGTAGAAGCTCGTGTAGAA
GTGATTGCTCTTAAATCAGAGCTACCAGTTGTGAAACGTATTGCTCCAAATACTAACTTGAATTCTGTAG
ACAAATCTGTTTCCTATGTTTTGACTGATGGAAGTGTACAAGAGTATGAAGTGGACAAGTGGGAGATTGC
CGAAGAAGATAAAGCTAAGTTAGCAATTCCAGGTTCTCGTATTCAAGCGACCGGTTATTTAGAAGGTCAA
CCAATTCATGCAACCCTTGTGGTAGAAGAAGGCAATCCTGCAGCACCTGTAGTGCCAACTGTTACTGTTG
GAGGTGAAGCAGTAACAGGTCTTACTAGTCGACAACCAATGCAATATCGTACTCTATCTTATGGTGCCCA
ATTGCCAGAAGTCACAGCAAGTGCTGAAAATGCTGATGTGACAGTTCTTCAAGCAAGCGCAGCAAACGGC
ATGCGTGCGAGCATCTTTATTCAGCCTAAAGATGGTGGCCCTCTTCAAACCTATGCAATTCAATTCCTTG
AAGAAGCGCCAAAAATTGCTCACTTGAGCTTGCAAGTGGAAAAAGCTGACAGTCTCAAAGAAGACCAAAC
TGTCAAATTGTCGGTTCGAGCTCACTATCAAGATGGAACGCAAGCTGTATTACCAGCTGATAAAGTAACC
TTCTCTACAAGTGGTGAAGGGGAAGTCGCAATTCGTAAAGGAATGCTTGAGTTGCATAAGCCAGGAGCAG
TCACTCTGAACGCTGAATATGAGGGAGCTAAAGGCCAAGTTGAACTCACTATCCAAGCCAATACTGAGAA
GAAGATTGCGCAATCTATCCGTCCTGTAAATGTAGTCACAGATTTGCATCAGGAACCAAGTCTTCCAGCA
ACAGTAACAGTTGAGTATGACAAAGGTTTCCCTAAAACTCATAAAGTCACTTGGCAAGCTATTCCGAAAG
AAAAACTAGACTCCTATCAAATATTTGAAGTACTAGGTAAAGTTGAAGGAATTGACCTTGAAGCGCGTGC
AAAAGTCTCTGTAGAAGGTATCGTTTCAGTTGAAGAAGTCAGTGTGACAACTCCAATCGCAGAAGCACCA
CAATTACCAGAAAGCGTTCGGACATATGATTCAAATGGTCACGTTTCATCAGCTAAGGTTGCATGGGATG
CGATTCGTCCAGAGCAATACGCTAAGGAAGGTGTCTTTACAGTTAATGGTCGCTTAGAAGGTACTCAATT
AACAACTAAACTTCATGTTCGCGTATCTGCTCAAACTGAGCAAGGTGCAAACATTTCTGACCAATGGACC
GGTTCAGAATTGCCACTTGCCTTTGCTTCAGATTCAAATCCAAGCGACCCAGTTTCAAATGTTAATGACA
AGCTCATTTCCTACAATAACCAACCAGCCAATCGTTGGACAAACTGGAATCGTAGTAATCCAGAAGCTTC
AGTCGGTGTTCTGTTTGGAGATTCAGGTATCTTGAGCAAACGCTCCGTTGATAATCTAAGTGTCGGATTC
CACGAAGACCATGGAGTTGGTGCACCGAAGTCTTATGTGATTGAGTATTATGTTGGCAAGACTGTCCCAA
CAGCTCCTAAAAACCCTAGTTTTGTTGGTAATGAGGACCATGTCTTTAATGATTCTGCCAACTGGAAACC
AGTTACTAATCTAAAAGCCCCTGCTAAACTCAAGGCTGGAGAAATGAACCACTTTAGCTTTGATAAAGTT
GAAACCTATGCTGTTCGTATTCGCATGGTTAAAGCAGATAACAAGCGTGGAACGTCTATCACAGAGGTAC
AAATCTTTGCGAAACAAGTTGCGGCAGCCAAGCAAGGACAAACAAGAATCCAAGTTGACGGCAAAGACTT
AGCAAACTTCAACCCTGATTTGACAGACTACTACCTTGAGTCTGTAGATGGAAAAGTTCCGGCAGTCACA
GCAAGTGTTAGCAACAATGGTCTCGCTACCGTCGTTCCAAGCGTTCGTGAAGGTGAGCCAGTTCGTGTCA
TCGCGAAAGCTGAAAATGGCGATATCTTAGGAGAATACCGTCTGCACTTCACTAAGGATAAGAACTTACT
TTCTCATAAACCAGTTGCTGCGGTTAAACAAGCTCGCTTGCTACAAGTAGGTCAAGCACTTGAATTGCCG
ACTAAGGTTCCAGTTTACTTCACAGGTAAAGACAGCTACGAAACAAAAGACCTGACAGTTGAATGGGAAG
AAGTTCCAGCGGAAAATCTGACAAAAGCAGGTCAATTTACTATTCGAGGCCGTGTCCTTGGTAGTGACCT
TGTTGCTGAGGTCACTGTACGAGTGACAGACAAACTTGGTGAGGCTCTTTCAGATAACCCTAACTATGAT
GAAAACAGTAACCAGGCCTTTGCTTCAGCAACAAATGATATTGACAAAAACTCTCATGACCGCGTTGACT
ATCTCAATGACGGAGATCATTCAGAAAATCGTCGTTGGACAAACTGGTCACCAACACCATCTTCTAATCC
AGAAGTATCAGCGGGTGTGATCTTCCGTGAAAATGGTAAGTTTGTAGAACGGACTGTTGCTCAAGCCAAA
CTTCACTTCTTTGCAGATAGTGGTACGGATGCACCAACTAAACTCGTTTTAGAACGCTATGTCGGTCCAG
AGTTTGAAGTGCCAACCTACTATTCAAACTACCAAGCCTACGACGCAGACCATCCATTCAACAATCCAGA
AAATTGGGAAGCTGTGCCTTATCGTGCGGATAAAGACATCGCAGCTGGTGATGAAATCAACGTAACATTT
AAAGCTGTCAAAGCCAAAGCTATGAGATGGCGTATGGAGCGTAAAGCAGATAAGAGCGGTGTTGCGATGA
TTGAGATGACCTTCCTTGCACCAAGTGAATTGCCTCAAGAAAGCACGCAATCGAAGATTCTTGTAGATGG
AAAAGAACTTGCTGATTTCGCTGAAAATCGTCAAGACTATCAAATTACCTATAAAGGTCAACGGCCAAAA
GTCTCAGTTGAAGAAAACAATCAAGTAGCTTCAACTGTGGTAGATAGTGGAGAAGATAGCCTTCCAGTAC
TTGTTCGCCTCGTTTCAGAAAGTGGAAAACAAGTCAAGGAATACCGTATCCACTTGACTAAGGAAAAACC
AGTTTCTGAGAAGACAGTTGCTGCTGTACAAGAAGATCTTCCAAAACTCGAATTTGTTGAAAAAGATTTG
GCCTACAAGACAGTTGAGAAAAAAGATTCAACACTGTATCTAGGTGAAACTCGTGTAGAACAAGAAGGAA
AAACTGGTAAAGAACGTATCTTTACAGCGATTAATCCTGATGGAAGTAAGGAAGAAAAACTCCGTGAAGT
GGTAGAAGCTCCGACAGACCGCATCGTCTTGGTTGGAACCAAACCAGTAGCTCAAGAAGCTAAAAAACCA
CAAGTGTCAGAAAAAGCAGATACAAAACCAATTGATTCAAGTGAAGCTAGTCAAACTAATAAAGCCCAGT
TACCAAATACAGGTAGTGCGGCAAGCCAAGCAGCAGTAGCAGCAGGTTTAGCTCTTCTAGGTTTGAGTGC
AGGATTAGTAGTTACTAAAGGTAAAAAAGAAGACTAG
sybil web site: sybil.sourceforge.net e-mail: driley@som.umaryland.edu