sybil: pneumo: home [db=strepneumo-sybil]

A new version of strepneumo exists at http://strepneumo-sybil.igs.umaryland.edu. This site will be removed in the coming months.

Welcome to the Streptococcus Pneumoniae Comparative System powered by Sybil introduction
This website is built on top of a Chado comparative database and provides a number of tools for analyzing and visualizing the data.
Sybil relies on precomputed searches-- primarily BLASTP searches and protein clustering analyses--the results of which are stored in the comparative database and queried as needed.
Here is a summary of where you can go from this page and how to move around Sybil:
  • Click on the thumbnails below to generate visualizations of the data. From these visualizations you can drill down further by clicking on the features displayed in the images.
  • To find a specific gene use the "Search for genes/proteins" tool below.
  • You will find a summary of the analyses and organisms loaded at the bottom of the page
  • Click on the "help" link at the top-right of any section to get more information.
  • Click on the "strepneumo-sybil" link in the top-right corner of any page to return to this page.
  • For help or to report bugs use the e-mail link in the bottom-right corner of every page.
Note: This site has only been tested fully with the Mozilla Firefox browser. Some features will not work properly in other browsers.

Funding for this project provided by PATH, an international nonprofit organization that improves the health of people around the world.
Search for genes/proteins search for genes/proteins using keywords [help]
Search for genes/proteins using these keywords:
--> enter one or more keywords (e.g., transposase, deacetylase) separated by commas and then hit return or click on "search". Valid SQL regular expressions are also usable such as "ORF0027[13]" and "ntsp[46])"
Sybil graphical displays
Sybil table and list displays
Sybil list displays
Sybil static displays
Protein Cluster Size Histogram for JOCs orthologous clusters - Analysis of cluster sizes for JOCs orthologous clusters
Protein Cluster Size Histogram for jaccard paralogous clusters - Analysis of cluster sizes for jaccard paralogous clusters
Analyses/computes all analyses/computes loaded into chado [help]
program / version date description
TERM / TERM_version 2007-12-29 16:32:00 TERM
RBS / RBS_version 2007-12-29 16:32:00 RBS
wu-blastp / 2.0 2007-12-29 18:06:00 wu-blastp
j_ortholog_clusters / $Name$ 2007-12-29 17:30:00 JOCs orthologous clusters
jaccard / $Name$ 2007-12-29 17:11:00 jaccard paralogous clusters
Organisms/genomes all organisms/genomes loaded into chado [help]
organism source database(s)
Streptococcus pneumoniae TIGR4 TIGR_Bsp
Streptococcus pneumoniae D39 TIGR_Ntsp14
Streptococcus pneumoniae 70585 TIGR_Sp70585
Streptococcus pneumoniae JJA TIGR_Spjja
Streptococcus pneumoniae R6 TIGR_Ntsp02
Streptococcus pneumoniae G54 TIGR_Ntsp05
Streptococcus pneumoniae Taiwan19F-14 TIGR_Spt01
Streptococcus pneumoniae P1031 TIGR_Spp1031
Streptococcus pneumoniae Hungary19A-6 TIGR_Sph01
Streptococcus pneumoniae 670 TIGR_Gpa
sybil web site: sybil.sourceforge.net e-mail: driley@som.umaryland.edu